3D structure

PDB id
6WDG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
6WDG|1|3|A|532, 6WDG|1|3|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDG_135 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1967
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6WDG|1|3|G|515
6WDG|1|3|U|516
6WDG|1|3|G|517
6WDG|1|3|C|518
6WDG|1|3|C|519
6WDG|1|3|A|520
6WDG|1|3|G|521
*
6WDG|1|3|C|528
6WDG|1|3|G|529
6WDG|1|3|G|530
6WDG|1|3|U|531
6WDG|1|3|A|532
6WDG|1|3|A|533
6WDG|1|3|U|534
6WDG|1|3|A|535
6WDG|1|3|C|536

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 4
mRNA
Chain 7
Transfer RNA; tRNA
Chain H
30S ribosomal protein S3
Chain I
30S ribosomal protein S4
Chain Q
30S ribosomal protein S12

Coloring options:


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