IL_6WDI_175

3D structure

PDB id

6WDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AG*CGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDI_175 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2597

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6WDI|1|7|A|26
6WDI|1|7|G|27
*
6WDI|1|7|C|43
6WDI|1|7|G|44
6WDI|1|7|U|45

Current chains

Chain 7

tRNAPhe

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 3

Small subunit ribosomal RNA; SSU rRNA