3D structure

PDB id
6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
6WDJ|1|1|A|1801, 6WDJ|1|1|C|1816, 6WDJ|1|1|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDJ_068 not in the Motif Atlas
Homologous match to IL_5J7L_313
Geometric discrepancy: 0.1145
The information below is about IL_5J7L_313
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

6WDJ|1|1|U|1798
6WDJ|1|1|G|1799
6WDJ|1|1|C|1800
6WDJ|1|1|A|1801
6WDJ|1|1|A|1802
6WDJ|1|1|A|1803
6WDJ|1|1|C|1804
*
6WDJ|1|1|G|1813
6WDJ|1|1|G|1814
6WDJ|1|1|A|1815
6WDJ|1|1|C|1816
6WDJ|1|1|G|1817
6WDJ|1|1|U|1818
6WDJ|1|1|A|1819
6WDJ|1|1|U|1820
6WDJ|1|1|A|1821

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 3
Small subunit ribosomal RNA; SSU rRNA
Chain b
50S ribosomal protein L2

Coloring options:


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