IL_6WDJ_068
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 6WDJ|1|1|A|1801, 6WDJ|1|1|C|1816, 6WDJ|1|1|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDJ_068 not in the Motif Atlas
- Homologous match to IL_5J7L_313
- Geometric discrepancy: 0.1145
- The information below is about IL_5J7L_313
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6WDJ|1|1|U|1798
6WDJ|1|1|G|1799
6WDJ|1|1|C|1800
6WDJ|1|1|A|1801
6WDJ|1|1|A|1802
6WDJ|1|1|A|1803
6WDJ|1|1|C|1804
*
6WDJ|1|1|G|1813
6WDJ|1|1|G|1814
6WDJ|1|1|A|1815
6WDJ|1|1|C|1816
6WDJ|1|1|G|1817
6WDJ|1|1|U|1818
6WDJ|1|1|A|1819
6WDJ|1|1|U|1820
6WDJ|1|1|A|1821
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain b
- 50S ribosomal protein L2
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