IL_6WDK_067

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6WDK|1|1|A|1801, 6WDK|1|1|C|1816, 6WDK|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDK_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1091

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6WDK|1|1|U|1798
6WDK|1|1|G|1799
6WDK|1|1|C|1800
6WDK|1|1|A|1801
6WDK|1|1|A|1802
6WDK|1|1|A|1803
6WDK|1|1|C|1804
*
6WDK|1|1|G|1813
6WDK|1|1|G|1814
6WDK|1|1|A|1815
6WDK|1|1|C|1816
6WDK|1|1|G|1817
6WDK|1|1|U|1818
6WDK|1|1|A|1819
6WDK|1|1|U|1820
6WDK|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2