IL_6WDL_175

3D structure

PDB id

6WDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6WDL|1|1|U|846, 6WDL|1|1|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDL_175 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.2439

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

6WDL|1|1|A|844
6WDL|1|1|A|845
6WDL|1|1|U|846
6WDL|1|1|U|847
6WDL|1|1|C|848
*
6WDL|1|1|G|930
6WDL|1|1|U|931
6WDL|1|1|U|932
6WDL|1|1|A|933
6WDL|1|1|U|934

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain z

50S ribosomal protein L30