IL_6WDR_029

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUACA*UGUAAU

Length

11 nucleotides

Bulged bases

6WDR|1|2|A|769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_029 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.2871

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6WDR|1|2|A|744
6WDR|1|2|U|745
6WDR|1|2|A|746
6WDR|1|2|C|747
6WDR|1|2|A|748
*
6WDR|1|2|U|765
6WDR|1|2|G|766
6WDR|1|2|U|767
6WDR|1|2|A|768
6WDR|1|2|A|769
6WDR|1|2|U|770

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain e

40S ribosomal protein S30-A