IL_6WDR_070

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

6WDR|1|2|G|722

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_070 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.1361

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6WDR|1|2|C|706
6WDR|1|2|C|707
6WDR|1|2|A|708
6WDR|1|2|A|709
6WDR|1|2|U|710
6WDR|1|2|C|711
*
6WDR|1|2|G|721
6WDR|1|2|G|722
6WDR|1|2|A|723
6WDR|1|2|G|724

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S24-A