IL_6WDR_072

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_072 not in the Motif Atlas

Homologous match to IL_8P9A_402

Geometric discrepancy: 0.337

The information below is about IL_8P9A_402

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6WDR|1|2|A|813
6WDR|1|2|G|814
6WDR|1|2|G|815
6WDR|1|2|G|816
6WDR|1|2|C|817
6WDR|1|2|A|818
6WDR|1|2|A|819
6WDR|1|2|G|820
*
6WDR|1|2|C|850
6WDR|1|2|U|851

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain J

40S ribosomal protein S9-A

Chain e

40S ribosomal protein S30-A