IL_6WLU_115

3D structure

PDB id

6WLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

V. cholerae glycine riboswitch with glycine models, 5.7 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAAG*UCAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WLU_115 not in the Motif Atlas

Geometric match to IL_8B0X_116

Geometric discrepancy: 0.3819

The information below is about IL_8B0X_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6WLU|12|A|C|62
6WLU|12|A|G|63
6WLU|12|A|A|64
6WLU|12|A|A|65
6WLU|12|A|G|66
*
6WLU|12|A|U|78
6WLU|12|A|C|79
6WLU|12|A|A|80
6WLU|12|A|G|81

Current chains

Chain A

RNA (231-MER)

Nearby chains