IL_6WNT_016

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6WNT|1|4|G|801, 6WNT|1|4|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1086

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6WNT|1|4|G|674
6WNT|1|4|A|675
6WNT|1|4|A|676
6WNT|1|4|A|677
6WNT|1|4|C|678
*
6WNT|1|4|G|799
6WNT|1|4|A|800
6WNT|1|4|G|801
6WNT|1|4|A|802
6WNT|1|4|U|803
6WNT|1|4|A|804
6WNT|1|4|G|805
6WNT|1|4|C|806

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15