IL_6WNT_025

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_025 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.1266

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WNT|1|4|G|856
6WNT|1|4|G|857
6WNT|1|4|G|858
6WNT|1|4|G|859
6WNT|1|4|U|860
6WNT|1|4|A|861
6WNT|1|4|G|862
*
6WNT|1|4|C|915
6WNT|1|4|G|916
6WNT|1|4|A|917
6WNT|1|4|A|918
6WNT|1|4|U|919
6WNT|1|4|A|920
6WNT|1|4|C|921

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain w

50S ribosomal protein L27

Chain z

50S ribosomal protein L30