IL_6WNT_036

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGAGUAG*CGAUGGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_036 not in the Motif Atlas

Geometric match to IL_1DFU_001

Geometric discrepancy: 0.076

The information below is about IL_1DFU_001

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6WNT|1|4|C|1039
6WNT|1|4|G|1040
6WNT|1|4|A|1041
6WNT|1|4|G|1042
6WNT|1|4|A|1043
6WNT|1|4|G|1044
6WNT|1|4|U|1045
6WNT|1|4|A|1046
6WNT|1|4|G|1047
*
6WNT|1|4|C|1137
6WNT|1|4|G|1138
6WNT|1|4|A|1139
6WNT|1|4|U|1140
6WNT|1|4|G|1141
6WNT|1|4|G|1142
6WNT|1|4|U|1143
6WNT|1|4|A|1144
6WNT|1|4|G|1145

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain v

50S ribosomal protein L25

Chain z

50S ribosomal protein L30