IL_6WNT_041

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6WNT|1|4|U|1161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_041 not in the Motif Atlas

Homologous match to IL_5TBW_378

Geometric discrepancy: 0.438

The information below is about IL_5TBW_378

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6WNT|1|4|G|1159
6WNT|1|4|A|1160
6WNT|1|4|U|1161
6WNT|1|4|G|1162
*
6WNT|1|4|C|1249
6WNT|1|4|G|1250
6WNT|1|4|C|1251

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36