IL_6WNT_048

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6WNT|1|4|C|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_048 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.096

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6WNT|1|4|C|1336
6WNT|1|4|U|1337
6WNT|1|4|G|1338
6WNT|1|4|C|1339
6WNT|1|4|G|1340
6WNT|1|4|A|1341
6WNT|1|4|A|1342
6WNT|1|4|G|1343
*
6WNT|1|4|U|1362
6WNT|1|4|G|1363
6WNT|1|4|G|1364
6WNT|1|4|A|1365
6WNT|1|4|G|1366

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20