IL_6WNT_057

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

6WNT|1|4|U|1682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_057 not in the Motif Atlas

Geometric match to IL_5J7L_297

Geometric discrepancy: 0.0881

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6WNT|1|4|C|1565
6WNT|1|4|U|1566
6WNT|1|4|A|1567
6WNT|1|4|U|1568
*
6WNT|1|4|A|1679
6WNT|1|4|A|1680
6WNT|1|4|A|1681
6WNT|1|4|U|1682
6WNT|1|4|G|1683

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains