IL_6WNT_063

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_063 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2852

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6WNT|1|4|C|1654
6WNT|1|4|G|1655
6WNT|1|4|A|1656
6WNT|1|4|G|1657
6WNT|1|4|G|1658
*
6WNT|1|4|C|1669
6WNT|1|4|U|1670
6WNT|1|4|G|1671
6WNT|1|4|A|1672
6WNT|1|4|A|1673
6WNT|1|4|G|1674

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains