IL_6WNT_066

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_066 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.0894

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6WNT|1|4|G|1794
6WNT|1|4|G|1795
6WNT|1|4|A|1796
6WNT|1|4|A|1797
*
6WNT|1|4|U|2121
6WNT|1|4|C|2122

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14