IL_6WNT_070

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_070 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.1475

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6WNT|1|4|U|1848
6WNT|1|4|G|1849
6WNT|1|4|A|1850
6WNT|1|4|G|1851
6WNT|1|4|G|1852
*
6WNT|1|4|U|1864
6WNT|1|4|G|1865
6WNT|1|4|G|1866
6WNT|1|4|A|1867
6WNT|1|4|G|1868

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains