IL_6WNT_078

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6WNT|1|4|A|2066, 6WNT|1|4|U|2072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_078 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1464

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6WNT|1|4|C|2062
6WNT|1|4|G|2063
6WNT|1|4|A|2064
6WNT|1|4|A|2065
6WNT|1|4|A|2066
6WNT|1|4|U|2067
6WNT|1|4|U|2068
6WNT|1|4|C|2069
6WNT|1|4|C|2070
6WNT|1|4|U|2071
6WNT|1|4|U|2072
6WNT|1|4|G|2073
*
6WNT|1|4|C|2089
6WNT|1|4|C|2090
6WNT|1|4|U|2091
6WNT|1|4|G|2092

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2