IL_6WNT_085

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCU*AUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_085 not in the Motif Atlas

Geometric match to IL_3TZR_003

Geometric discrepancy: 0.2942

The information below is about IL_3TZR_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6WNT|1|4|G|2230
6WNT|1|4|C|2231
6WNT|1|4|C|2232
6WNT|1|4|U|2233
*
6WNT|1|4|A|2312
6WNT|1|4|U|2313
6WNT|1|4|G|2314
6WNT|1|4|U|2315

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1

Chain g

50S ribosomal protein L9