IL_6WNT_097

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_097 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1178

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6WNT|1|4|C|2780
6WNT|1|4|U|2781
6WNT|1|4|A|2782
6WNT|1|4|G|2783
6WNT|1|4|U|2784
6WNT|1|4|A|2785
6WNT|1|4|C|2786
*
6WNT|1|4|G|2791
6WNT|1|4|G|2792
6WNT|1|4|A|2793
6WNT|1|4|C|2794
6WNT|1|4|C|2795
6WNT|1|4|G|2796

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L6