IL_6WNT_101

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

6WNT|1|4|A|2893

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_101 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.0888

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6WNT|1|4|G|2865
6WNT|1|4|A|2866
6WNT|1|4|U|2867
6WNT|1|4|A|2868
6WNT|1|4|A|2869
6WNT|1|4|G|2870
*
6WNT|1|4|C|2890
6WNT|1|4|G|2891
6WNT|1|4|A|2892
6WNT|1|4|A|2893
6WNT|1|4|A|2894
6WNT|1|4|C|2895

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13