IL_6WNV_161
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6WNV|1|4|G|2908
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNV_161 not in the Motif Atlas
- Geometric match to IL_5J7L_345
- Geometric discrepancy: 0.1235
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6WNV|1|4|C|2764
6WNV|1|4|U|2765
6WNV|1|4|G|2766
6WNV|1|4|A|2767
6WNV|1|4|G|2768
*
6WNV|1|4|C|2902
6WNV|1|4|G|2903
6WNV|1|4|A|2904
6WNV|1|4|G|2905
6WNV|1|4|A|2906
6WNV|1|4|U|2907
6WNV|1|4|G|2908
6WNV|1|4|A|2909
6WNV|1|4|G|2910
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
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