IL_6WNV_164
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 6WNV|1|4|U|2817, 6WNV|1|4|U|2818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNV_164 not in the Motif Atlas
- Geometric match to IL_5J7L_348
- Geometric discrepancy: 0.0862
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
6WNV|1|4|U|2815
6WNV|1|4|G|2816
6WNV|1|4|U|2817
6WNV|1|4|U|2818
6WNV|1|4|C|2819
*
6WNV|1|4|G|2846
6WNV|1|4|G|2847
6WNV|1|4|U|2848
6WNV|1|4|A|2849
6WNV|1|4|G|2850
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain n
- 50S ribosomal protein L17
- Chain p
- 50S ribosomal protein L19
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