IL_6WNW_139

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6WNW|1|4|A|1929, 6WNW|1|4|C|1944, 6WNW|1|4|U|1948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_139 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0704

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6WNW|1|4|U|1926
6WNW|1|4|G|1927
6WNW|1|4|C|1928
6WNW|1|4|A|1929
6WNW|1|4|A|1930
6WNW|1|4|A|1931
6WNW|1|4|C|1932
*
6WNW|1|4|G|1941
6WNW|1|4|G|1942
6WNW|1|4|A|1943
6WNW|1|4|C|1944
6WNW|1|4|G|1945
6WNW|1|4|U|1946
6WNW|1|4|A|1947
6WNW|1|4|U|1948
6WNW|1|4|A|1949

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2