IL_6WOO_003

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

6WOO|1|2|A|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_003 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.1283

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6WOO|1|2|U|36
6WOO|1|2|C|37
6WOO|1|2|A|38
6WOO|1|2|A|39
6WOO|1|2|A|40
*
6WOO|1|2|U|465
6WOO|1|2|G|466
6WOO|1|2|A|467
6WOO|1|2|C|468
6WOO|1|2|A|469
6WOO|1|2|A|470

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

eIF5B

Chain EE

eS4

Chain JJ

uS4