IL_6WOO_011

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

6WOO|1|2|U|143, 6WOO|1|2|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1678

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6WOO|1|2|G|141
6WOO|1|2|G|142
6WOO|1|2|U|143
6WOO|1|2|A|144
6WOO|1|2|U|145
6WOO|1|2|A|146
6WOO|1|2|A|147
6WOO|1|2|C|148
*
6WOO|1|2|G|164
6WOO|1|2|C|165
6WOO|1|2|U|166
6WOO|1|2|A|167
6WOO|1|2|A|168
6WOO|1|2|U|169
6WOO|1|2|A|170
6WOO|1|2|C|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain GG

eS6

Chain YY

eS24