IL_6WOO_014

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_014 not in the Motif Atlas

Geometric match to IL_3BNR_012

Geometric discrepancy: 0.1461

The information below is about IL_3BNR_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6WOO|1|2|A|205
6WOO|1|2|U|206
6WOO|1|2|U|207
*
6WOO|1|2|A|256
6WOO|1|2|C|257
6WOO|1|2|U|258

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain II

eS8