IL_6WOO_017

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

6WOO|1|2|U|279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_017 not in the Motif Atlas

Geometric match to IL_4LFB_006

Geometric discrepancy: 0.3526

The information below is about IL_4LFB_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6WOO|1|2|G|273
6WOO|1|2|C|274
6WOO|1|2|C|275
*
6WOO|1|2|G|278
6WOO|1|2|U|279
6WOO|1|2|G|280
6WOO|1|2|C|281

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain GG

eS6