IL_6WOO_020

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6WOO|1|2|U|379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_020 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0942

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6WOO|1|2|G|362
6WOO|1|2|G|363
6WOO|1|2|G|364
*
6WOO|1|2|C|375
6WOO|1|2|G|376
6WOO|1|2|A|377
6WOO|1|2|U|378
6WOO|1|2|U|379
6WOO|1|2|C|380

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain XX

uS12