IL_6WOO_029

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_029 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.0832

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6WOO|1|2|A|549
6WOO|1|2|G|550
6WOO|1|2|G|551
6WOO|1|2|G|552
6WOO|1|2|C|553
6WOO|1|2|A|554
6WOO|1|2|A|555
6WOO|1|2|G|556
*
6WOO|1|2|C|586
6WOO|1|2|U|587

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain JJ

uS4

Chain ee

eS30