IL_6WOO_038

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAAAAUU*AUAUUAGC

Length

17 nucleotides

Bulged bases

6WOO|1|2|U|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_038 not in the Motif Atlas

Homologous match to IL_4V88_425

Geometric discrepancy: 0.2146

The information below is about IL_4V88_425

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53064.1

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6WOO|1|2|G|751
6WOO|1|2|A|752
6WOO|1|2|A|753
6WOO|1|2|A|754
6WOO|1|2|A|755
6WOO|1|2|A|756
6WOO|1|2|A|757
6WOO|1|2|U|758
6WOO|1|2|U|759
*
6WOO|1|2|A|791
6WOO|1|2|U|792
6WOO|1|2|A|793
6WOO|1|2|U|794
6WOO|1|2|U|795
6WOO|1|2|A|796
6WOO|1|2|G|797
6WOO|1|2|C|798

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain LL

uS17

Chain WW

uS8