IL_6WOO_046

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_046 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1924

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

6WOO|1|2|A|995
6WOO|1|2|U|996
6WOO|1|2|G|997
*
6WOO|1|2|C|1007
6WOO|1|2|G|1008
6WOO|1|2|U|1009

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain OO

uS11

Chain aa

eS26