IL_6WOO_047
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6WOO|1|2|C|1096, 6WOO|1|2|U|1098, 6WOO|1|2|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_047 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1452
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|2|C|1034
6WOO|1|2|G|1035
6WOO|1|2|A|1036
*
6WOO|1|2|U|1095
6WOO|1|2|C|1096
6WOO|1|2|U|1097
6WOO|1|2|U|1098
6WOO|1|2|U|1099
6WOO|1|2|G|1100
6WOO|1|2|G|1101
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain CC
- uS5
- Chain LL
- uS17
- Chain NN
- uS15
- Chain VV
- eS21
- Chain WW
- uS8
- Chain XX
- uS12
- Chain bb
- eS27
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