IL_6WOO_051

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_051 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0834

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6WOO|1|2|G|1111
6WOO|1|2|G|1112
6WOO|1|2|A|1113
6WOO|1|2|G|1114
6WOO|1|2|U|1115
6WOO|1|2|A|1116
6WOO|1|2|U|1117
6WOO|1|2|G|1118
*
6WOO|1|2|U|1129
6WOO|1|2|G|1130
6WOO|1|2|A|1131
6WOO|1|2|A|1132
6WOO|1|2|A|1133
6WOO|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain XX

uS12

Chain n

eL41