IL_6WOO_058

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUAAGGAUUG*CUUGAUUU

Length

18 nucleotides

Bulged bases

6WOO|1|2|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_058 not in the Motif Atlas

Geometric match to IL_8P9A_470

Geometric discrepancy: 0.2713

The information below is about IL_8P9A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28304.1

Basepair signature

cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6WOO|1|2|A|1224
6WOO|1|2|U|1225
6WOO|1|2|A|1226
6WOO|1|2|A|1227
6WOO|1|2|G|1228
6WOO|1|2|G|1229
6WOO|1|2|A|1230
6WOO|1|2|U|1231
6WOO|1|2|U|1232
6WOO|1|2|G|1233
*
6WOO|1|2|C|1252
6WOO|1|2|U|1253
6WOO|1|2|U|1254
6WOO|1|2|G|1255
6WOO|1|2|A|1256
6WOO|1|2|U|1257
6WOO|1|2|U|1258
6WOO|1|2|U|1259

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain KK

eS10

Chain MM

eS12

Chain dd

uS14

Chain ff

eS31