IL_6WOO_063

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6WOO|1|2|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_063 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.1769

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6WOO|1|2|C|1280
6WOO|1|2|G|1281
*
6WOO|1|2|C|1426
6WOO|1|2|A|1427
6WOO|1|2|G|1428

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain DD

uS3

Chain QQ

uS19

Chain UU

uS10

Chain dd

uS14