IL_6WOO_070

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCAGCGA*UUGUGAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_070 not in the Motif Atlas

Homologous match to IL_4V88_459

Geometric discrepancy: 0.1913

The information below is about IL_4V88_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10447.1

Basepair signature

cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6WOO|1|2|G|1480
6WOO|1|2|C|1481
6WOO|1|2|C|1482
6WOO|1|2|A|1483
6WOO|1|2|G|1484
6WOO|1|2|C|1485
6WOO|1|2|G|1486
6WOO|1|2|A|1487
*
6WOO|1|2|U|1519
6WOO|1|2|U|1520
6WOO|1|2|G|1521
6WOO|1|2|U|1522
6WOO|1|2|G|1523
6WOO|1|2|A|1524
6WOO|1|2|A|1525
6WOO|1|2|A|1526
6WOO|1|2|C|1527

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain FF

uS7

Chain QQ

uS19

Chain TT

eS19

Chain UU

uS10

Chain dd

uS14