IL_6WOO_079

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_079 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.1168

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6WOO|1|2|C|1653
6WOO|1|2|G|1654
6WOO|1|2|A|1655
6WOO|1|2|U|1656
*
6WOO|1|2|A|1744
6WOO|1|2|G|1745
6WOO|1|2|A|1746
6WOO|1|2|G|1747

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

eIF5B

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain n

eL41