IL_6WOO_112
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6WOO|1|5|A|933, 6WOO|1|5|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_112 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0694
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6WOO|1|5|G|805
6WOO|1|5|A|806
6WOO|1|5|A|807
6WOO|1|5|A|808
6WOO|1|5|G|809
*
6WOO|1|5|C|931
6WOO|1|5|U|932
6WOO|1|5|A|933
6WOO|1|5|G|934
6WOO|1|5|U|935
6WOO|1|5|A|936
6WOO|1|5|G|937
6WOO|1|5|C|938
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain a
- uL15
- Chain j
- eL37
Coloring options: