IL_6WOO_134
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_134 not in the Motif Atlas
- Homologous match to IL_5TBW_049
- Geometric discrepancy: 0.1093
- The information below is about IL_5TBW_049
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|U|1173
6WOO|1|5|G|1174
6WOO|1|5|C|1175
6WOO|1|5|C|1176
6WOO|1|5|G|1177
6WOO|1|5|G|1178
6WOO|1|5|A|1179
6WOO|1|5|A|1180
*
6WOO|1|5|U|1325
6WOO|1|5|A|1326
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain F
- uL30
- Chain O
- uL13
- Chain S
- eL20
- Chain f
- eL33
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