IL_6WOO_141

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6WOO|1|5|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_141 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2304

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6WOO|1|5|G|1262
6WOO|1|5|A|1263
6WOO|1|5|G|1264
6WOO|1|5|U|1265
6WOO|1|5|G|1266
*
6WOO|1|5|C|1275
6WOO|1|5|U|1276
6WOO|1|5|C|1277

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain K

L10

Chain r

uL10