IL_6WOO_147
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_147 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.0839
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
6WOO|1|5|G|1492
6WOO|1|5|G|1493
6WOO|1|5|U|1494
6WOO|1|5|U|1495
*
6WOO|1|5|A|1835
6WOO|1|5|C|1836
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain X
- uL23
- Chain g
- eL34
- Chain j
- eL37
- Chain l
- eL39
Coloring options: