IL_6WOO_157

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_157 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0996

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6WOO|1|5|U|1694
6WOO|1|5|U|1695
6WOO|1|5|A|1696
6WOO|1|5|A|1697
6WOO|1|5|C|1698
*
6WOO|1|5|G|1747
6WOO|1|5|G|1748
6WOO|1|5|A|1749
6WOO|1|5|A|1750
6WOO|1|5|G|1751
6WOO|1|5|A|1752

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain g

eL34

Chain k

eL38