IL_6WOO_164
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6WOO|1|5|U|1931
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_164 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0926
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_47346.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6WOO|1|5|C|1918
6WOO|1|5|G|1919
6WOO|1|5|U|1920
6WOO|1|5|A|1921
6WOO|1|5|A|1922
6WOO|1|5|C|1923
*
6WOO|1|5|G|1928
6WOO|1|5|G|1929
6WOO|1|5|A|1930
6WOO|1|5|U|1931
6WOO|1|5|A|1932
6WOO|1|5|A|1933
6WOO|1|5|G|1934
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain R
- eL19
- Chain p
- eL43
Coloring options: