IL_6WOO_170
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 6WOO|1|5|U|2159, 6WOO|1|5|U|2175, 6WOO|1|5|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_170 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0896
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|C|2156
6WOO|1|5|G|2157
6WOO|1|5|A|2158
6WOO|1|5|U|2159
6WOO|1|5|G|2160
6WOO|1|5|G|2161
*
6WOO|1|5|U|2173
6WOO|1|5|G|2174
6WOO|1|5|U|2175
6WOO|1|5|U|2176
6WOO|1|5|G|2177
6WOO|1|5|A|2178
6WOO|1|5|C|2179
6WOO|1|5|G|2180
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain p
- eL43
Coloring options: