IL_6WOO_186
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 6WOO|1|5|G|2522, 6WOO|1|5|G|2585, 6WOO|1|5|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_186 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.1679
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|A|2520
6WOO|1|5|U|2521
6WOO|1|5|G|2522
6WOO|1|5|A|2523
6WOO|1|5|A|2524
6WOO|1|5|G|2525
6WOO|1|5|C|2526
*
6WOO|1|5|G|2584
6WOO|1|5|G|2585
6WOO|1|5|G|2586
6WOO|1|5|U|2587
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- uL2
- Chain G
- eL8
- Chain X
- uL23
Coloring options: