IL_6WOO_197
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_197 not in the Motif Atlas
- Homologous match to IL_5TBW_106
- Geometric discrepancy: 0.14
- The information below is about IL_5TBW_106
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6WOO|1|5|U|2835
6WOO|1|5|C|2836
6WOO|1|5|A|2837
6WOO|1|5|A|2838
6WOO|1|5|G|2839
*
6WOO|1|5|C|2849
6WOO|1|5|G|2850
6WOO|1|5|A|2851
6WOO|1|5|C|2852
6WOO|1|5|A|2853
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 1
- eIF5B
- Chain I
- uL16
- Chain m
- eL40
Coloring options: