IL_6WOO_205
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAU*AGAACG
- Length
- 10 nucleotides
- Bulged bases
- 6WOO|1|5|A|3142, 6WOO|1|5|C|3143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_205 not in the Motif Atlas
- Homologous match to IL_5TBW_114
- Geometric discrepancy: 0.0884
- The information below is about IL_5TBW_114
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6WOO|1|5|C|3004
6WOO|1|5|A|3005
6WOO|1|5|A|3006
6WOO|1|5|U|3007
*
6WOO|1|5|A|3139
6WOO|1|5|G|3140
6WOO|1|5|A|3141
6WOO|1|5|A|3142
6WOO|1|5|C|3143
6WOO|1|5|G|3144
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain B
- uL3
- Chain O
- uL13
Coloring options: