IL_6WOO_209

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6WOO|1|5|U|3056, 6WOO|1|5|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_209 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1028

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6WOO|1|5|U|3054
6WOO|1|5|U|3055
6WOO|1|5|U|3056
6WOO|1|5|U|3057
6WOO|1|5|U|3058
6WOO|1|5|G|3059
*
6WOO|1|5|C|3084
6WOO|1|5|G|3085
6WOO|1|5|A|3086
6WOO|1|5|A|3087
6WOO|1|5|G|3088

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

uL3

Chain W

eL24

Chain d

eL31